jasterv/sarscov-hierarchy
1
0
Fork 0
mirror of https://codeberg.org/JasterV/sarscov-hierarchy.git synced 2026-04-27 02:15:45 +00:00
Code Issues Projects Releases Packages Wiki Activity Actions

Merge branch 'master' of github.com:JasterV/COVID-19-CHALLENGE

Browse source
This commit is contained in:
JasterV 2020-05-22 17:49:48 +02:00
commit d9d2cd3276
3 changed files with 562099 additions and 0 deletions
Download patch file Download diff file Expand all files Collapse all files

35
data/data_test/sequences.csv Normal file
View file

@ -0,0 +1,35 @@
Accession,Release_Date,Species,Length,Geo_Location,Host,Isolation_Source,Collection_Date
MT292569,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29780,Spain,Homo sapiens,,2020-03-09
MT292570,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29781,Spain,Homo sapiens,,2020-03-10
MT292571,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29782,Spain,Homo sapiens,,2020-03-09
MT292572,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29783,Spain,Homo sapiens,,2020-03-10
MT292574,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29784,Spain,Homo sapiens,oronasopharynx,2020-03-02
MT292575,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29785,Spain,Homo sapiens,,2020-03-10
MT292576,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29786,Spain,Homo sapiens,,2020-03-10
MT292573,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29787,Spain,Homo sapiens,,2020-03-09
MT292577,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29788,Spain,Homo sapiens,,2020-03-08
MT292578,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29789,Spain,Homo sapiens,,2020-03-09
MT292579,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29790,Spain,Homo sapiens,,2020-03-09
MT292580,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29791,Spain,Homo sapiens,,2020-02-27
MT292581,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29792,Spain,Homo sapiens,,2020-02-27
MT292582,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29792,Spain,Homo sapiens,,2020-03-06
MT256917,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29792,Spain: Valencia,Homo sapiens,,2020-03-02
MT256918,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29792,Spain: Valencia,Homo sapiens,,2020-03-06
MT281577,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29903,"China: Anhui, Fuyang",Homo sapiens,feces,2020-03-10
MT291826,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29807,China: Wuhan,Homo sapiens,lung,2019-12-30
MT291827,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29858,China: Wuhan,Homo sapiens,lung,2019-12-30
MT291828,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29858,China: Wuhan,Homo sapiens,lung,2019-12-30
MT291829,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29774,China: Wuhan,Homo sapiens,lung,2019-12-30
MT291830,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29807,China: Wuhan,Homo sapiens,lung,2019-12-30
MT291831,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29872,China: Beijing,Homo sapiens,oronasopharynx,2020-01-24
MT291832,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29828,China: Beijing,Homo sapiens,oronasopharynx,2020-01-25
MT291833,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29821,China: Beijing,Homo sapiens,oronasopharynx,2020-01-28
MT291834,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29865,China: Beijing,Homo sapiens,oronasopharynx,2020-01-28
MT291835,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29834,China: Beijing,Homo sapiens,oronasopharynx,2020-01-27
MT291836,2020-04-06T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29860,China: Beijing,Homo sapiens,oronasopharynx,2020-01-29
MT259226,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29868,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-10
MT259227,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29863,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-26
MT259228,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29861,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-26
MT259229,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29864,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-26
MT259230,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29866,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-25
MT259231,2020-03-30T00:00:00Z,Severe acute respiratory syndrome-related coronavirus,29865,"China: Hubei, Wuhan",Homo sapiens,oronasopharynx,2020-01-25
1 Accession Release_Date Species Length Geo_Location Host Isolation_Source Collection_Date
2 MT292569 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29780 Spain Homo sapiens 2020-03-09
3 MT292570 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29781 Spain Homo sapiens 2020-03-10
4 MT292571 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29782 Spain Homo sapiens 2020-03-09
5 MT292572 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29783 Spain Homo sapiens 2020-03-10
6 MT292574 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29784 Spain Homo sapiens oronasopharynx 2020-03-02
7 MT292575 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29785 Spain Homo sapiens 2020-03-10
8 MT292576 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29786 Spain Homo sapiens 2020-03-10
9 MT292573 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29787 Spain Homo sapiens 2020-03-09
10 MT292577 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29788 Spain Homo sapiens 2020-03-08
11 MT292578 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29789 Spain Homo sapiens 2020-03-09
12 MT292579 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29790 Spain Homo sapiens 2020-03-09
13 MT292580 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29791 Spain Homo sapiens 2020-02-27
14 MT292581 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29792 Spain Homo sapiens 2020-02-27
15 MT292582 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29792 Spain Homo sapiens 2020-03-06
16 MT256917 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29792 Spain: Valencia Homo sapiens 2020-03-02
17 MT256918 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29792 Spain: Valencia Homo sapiens 2020-03-06
18 MT281577 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29903 China: Anhui, Fuyang Homo sapiens feces 2020-03-10
19 MT291826 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29807 China: Wuhan Homo sapiens lung 2019-12-30
20 MT291827 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29858 China: Wuhan Homo sapiens lung 2019-12-30
21 MT291828 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29858 China: Wuhan Homo sapiens lung 2019-12-30
22 MT291829 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29774 China: Wuhan Homo sapiens lung 2019-12-30
23 MT291830 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29807 China: Wuhan Homo sapiens lung 2019-12-30
24 MT291831 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29872 China: Beijing Homo sapiens oronasopharynx 2020-01-24
25 MT291832 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29828 China: Beijing Homo sapiens oronasopharynx 2020-01-25
26 MT291833 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29821 China: Beijing Homo sapiens oronasopharynx 2020-01-28
27 MT291834 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29865 China: Beijing Homo sapiens oronasopharynx 2020-01-28
28 MT291835 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29834 China: Beijing Homo sapiens oronasopharynx 2020-01-27
29 MT291836 2020-04-06T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29860 China: Beijing Homo sapiens oronasopharynx 2020-01-29
30 MT259226 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29868 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-10
31 MT259227 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29863 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-26
32 MT259228 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29861 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-26
33 MT259229 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29864 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-26
34 MT259230 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29866 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-25
35 MT259231 2020-03-30T00:00:00Z Severe acute respiratory syndrome-related coronavirus 29865 China: Hubei, Wuhan Homo sapiens oronasopharynx 2020-01-25

1208
data/sequences.csv Executable file
View file

File diff suppressed because it is too large Load diff

560856
data/sequences.fasta Executable file
View file

File diff suppressed because it is too large Load diff