# Welcome to Covid 19 challenge 👋
[![All Contributors](https://img.shields.io/badge/all_contributors-2-orange.svg?style=flat-square)](#-contributors-)
<img src="https://img.shields.io/badge/version-1.0-blue.svg?cacheSeconds=2592000" />


> The goal of this project is to read and analize RNA sequences of the Sars-Covid-2 virus around the world and build a hierarchy tree by implementing a hierarchical clustering algorithm

### 🏠 [Homepage](https://github.com/JasterV/COVID-19-CHALLENGE)

### Install Dependencies 

``` 
pip install -r requeriments.txt 📝
```

### ✨ Execute

From the [NCBI official database](https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202%20(SARS-CoV-2),%20taxid:2697049&SeqType_s=Nucleotide) download the sequences.fasta and sequences.csv files and you are ready to try this project!

We provide you a .zip file with 2 other fasta and csv files to try out without downloading anything so, have fun!


```
cd src/python
  
python3 sarscovhierarchy.py <data_path>
```

### Full Code Documentation

[Python Code Documentation](https://manudiv16.github.io/Covid-19-challenge)

[Rust Code Documentation](https://jasterv.github.io/rust-covid-docs/)

## 👤 Contributors ✨

<table>
  <tr>    
    <td align="center"><a href="https://github.com/manudiv16"><img src="https://avatars3.githubusercontent.com/u/38869988?v=4" width="100px;" alt=""/><br /><sub><b>Manu Martin</b></sub></a><br /><a href="https://github.com/JasterV/COVID-19-CHALLENGE/commits?author=manudiv16" title="Code">💻</a></td>
    <td align="center"><a href="https://github.com/JasterV"><img src="https://avatars3.githubusercontent.com/u/49537445?v=4" width="100px;" alt=""/><br /><sub><b>Victor Martínez</b></sub></a><br /><a href="https://github.com/JasterV/COVID-19-CHALLENGE/commits?author=JasterV" title="Code">💻</a></td>
  </tr>
</table>

## Show your support

Give us a ⭐️ if you like this project!
